Superphylum

For other uses, see Phyla.

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In biology, a phylum (/ˈfləm/; plural: phyla)[note 1] is a taxonomic rank below kingdom and above class. Traditionally, in botany the term division is used instead of "phylum", although in 1993 the International Botanical Congress accepted the designation "phylum".[1][2] The kingdom Animalia contains approximately 35 phyla; the kingdom Plantae contains 12 phyla. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta.

General description and familiar examples

Concepts of animal phyla have changed importantly from their origins in the six Linnaean classes and the four "embranchements" of Georges Cuvier.[3] Haeckel introduced the term phylum, based on the Greek word phylon.[4] In plant taxonomy, Eichler (1883) classified all plants into five groups, named divisions. [5] Informally, phyla can be thought of as grouping organisms based on general specialization of body plan.[6] At the most basic level, a phylum can be defined in two ways: as a group of organisms with a certain degree of morphological or developmental similarity (the phenetic definition), or a group of organisms with a certain degree of evolutionary relatedness (the phylogenetic definition).[7] Attempting to define a level of the Linnean hierarchy without referring to (evolutionary) relatedness is an unsatisfactory approach, but the phenetic definition is more useful when addressing questions of a morphological nature—such as how successful different body plans were.

Definition based on genetic relation

The largest objective measure in the above definitions is the "certain degree"—how unrelated do organisms need to be to be members of different phyla? The minimal requirement is that all organisms in a phylum should be related closely enough for them to be clearly more closely related to one another than to any other group.[7] However, even this is problematic, as the requirement depends on our current knowledge about organisms' relationships: As more data becomes available, particularly from molecular studies, we are better able to judge the relationships between groups. So phyla can be merged or split if it becomes apparent that they are related to one another or not. For example, the bearded worms were described as a new phylum (the Pogonophora) when described in 1914, but molecular work almost a century later found them closely related to annelids and merged the phyla, so that the bearded worms are now an annelid family.[8] Likewise, the highly parasitic phylum Mesozoa was divided into two phyla Orthonectida and Rhombozoa, when it was discovered the Orthonectida are deuterostomes and the Rhombozoa protostomes.[9]

This changeability of phyla has led some biologists to call for the concept of a phylum to be abandoned in favour of cladistics, a method in which groups are placed on a "family tree" without any formal ranking of group size.[7] So as to provide a handle on the size and significance of groups, a "body-plan" based definition of a phylum has been proposed by paleontologists Graham Budd and Sören Jensen. The definition was posited by paleontologists because extinct organisms are typically hardest to classify; they can be off-shoots that diverged from a phylum's line before the characters that define the modern phylum were all acquired.

Definition based on body plan

By Budd and Jensen's definition, phyla are defined by a set of characters shared by all their living representatives. This has a couple of small problems—for instance, characters common to most members of a phylum may be secondarily lost by some members. It is also defined based on an arbitrary point of time (the present). However, as it is character based, it is easy to apply to the fossil record. A more major problem is that it relies on an objective decision of which group of organisms should be considered a phylum.

Its utility is that it makes it easy to classify extinct organisms as "stem groups" to the phyla with which they bear the most resemblance, based only on the taxonomically important similarities.[7] However, proving that a fossil belongs to the crown group of a phylum is difficult, as it must display a character unique to a sub-set of the crown group.[7] Furthermore, organisms in the stem group of a phylum can possess the "body plan" of the phylum without all the characteristics necessary to fall within it. This weakens the idea that each of the phyla represents a distinct body plan.[10]

Based upon this definition, which some say is unreasonably affected by the chance survival of rare groups, which vastly increase the size of phyla, representatives of many modern phyla did not appear until long after the Cambrian.[11]

Lists

Animal phyla

Phylum Meaning Common name Distinguishing characteristic Species described
Acanthocephala Thorny headed worms Thorny-headed worms Reversible spiny proboscis that bears many rows of hooked spines approx. 756
Acoelomorpha Without gut Acoels No mouth or alimentary canal (alimentary canal = digestive tract in digestive system)
Annelida Little ring Segmented worms Multiple circular segment 17,000+ extant
Arthropoda Jointed foot Arthropods Segmented bodies and jointed limbs, with Chitin exoskeleton 1,134,000+
Brachiopoda Arm foot Lamp shells Lophophore and pedicle 300-500 extant
Bryozoa Moss animals Moss animals, sea mats Lophophore, no pedicle, ciliated tentacles, anus outside ring of cilia 5,000 extant
Chaetognatha Longhair jaw Arrow worms Chitinous spines either side of head, fins approx. 100 extant
Chordata With a cord Chordates Hollow dorsal nerve cord, notochord, pharyngeal slits, endostyle, post-anal tail approx. 100,000+
Cnidaria Stinging nettle Coelenterates Nematocysts (stinging cells) approx. 11,000
Ctenophora Comb bearer Comb jellies Eight "comb rows" of fused cilia approx. 100 extant
Cycliophora Wheel carrying Symbion Circular mouth surrounded by small cilia, sac-like bodies 3+
Echinodermata Spiny skin Echinoderms Fivefold radial symmetry in living forms, mesodermal calcified spines approx. 7,000 extant; approx. 13,000 extinct
Entoprocta Inside anus Goblet worm Anus inside ring of cilia approx. 150
Gastrotricha Hair stomach Meiofauna Two terminal adhesive tubes approx. 690
Gnathostomulida Jaw orifice Jaw worms approx. 100
Hemichordata Half cord Acorn worms, pterobranchs Stomochord in collar, pharyngeal slits approx. 100 extant
Kinorhyncha Motion snout Mud dragons Eleven segments, each with a dorsal plate approx. 150
Loricifera Corset bearer Brush heads Umbrella-like scales at each end approx. 122
Micrognathozoa Tiny jaw animals Accordion-like extensible thorax 1
Mollusca Soft Mollusks / molluscs Muscular foot and mantle round shell 112,000[12]
Nematoda Thread like Round worms Round cross section, keratin cuticle 80,000–1,000,000
Nematomorpha Thread form Horsehair worms approx. 320
Nemertea A sea nymph Ribbon worms approx. 1,200
Onychophora Claw bearer Velvet worms Legs tipped by chitinous claws approx. 200 extant
Orthonectida Straight swim Single layer of ciliated cells surrounding a mass of sex cells approx. 20
Phoronida Zeus's mistress Horseshoe worms U-shaped gut 11
Placozoa Plate animals 1
Platyhelminthes Flat worms Flat worms approx. 25,000[13]
Porifera* Pore bearer Sponges Perforated interior wall 5,000+ extant
Priapulida Little Priapus 16
Rhombozoa Lozenge animal Single anteroposterior axial cell surrounded by ciliated cells 75
Rotifera Wheel bearer Rotifers Anterior crown of cilia approx. 2,000
Sipuncula Small tube Peanut worms Mouth surrounded by invertible tentacles 144–320
Tardigrada Slow step Water bears Four segmented body and head 1,000+
Xenoturbellida Strange flatworm Ciliated deuterostome 2
Total: 35 2,000,000+
Protostome Bilateria
Deuterostome
Basal/disputed
Others (Radiata or Parazoa)

Groups formerly ranked as phyla

Name as phylum Common name Current consensus
Aschelminthes Pseudocoelomates Divided into several pseudocoelomate phyla.
Craniata Subgroup of phylum Chordata; perhaps synonymous with Vertebrata.
Cephalochordata Lancelets Subphylum of phylum Chordata.
Cephalorhyncha Superphylum Scalidophora.
Coelenterata Divided into phyla Cnidaria and Ctenophora.
Echiura Spoon worms Class of phylum Annelida.
Enteropneusta Acorn worms Class of phylum Hemichordata.
Gephyra Peanut worms and spoon worms Divided into phyla Sipuncula and Echiura.
Mesozoa Mesozoans Divided into phyla Orthonectida and Rhombozoa.
Myxozoa Severely modified Cnidarians.
Pentastomida Tongue worms Subclass of Maxillopoda of phylum Arthropoda.
Pogonophora Beard worms Part of family Siboglinidae of phylum Annelida.
Pterobranchia Class of phylum Hemichordata.
Symplasma Glass sponges Class Hexactinellida of phylum Porifera.
Urochordata Tunicates Subphylum of phylum Chordata.
Vestimentifera Vent worms Part of family Siboglinidae of phylum Annelida.

Plant divisions

Divisions into which living (extant) plants may be placed are shown in the table below. The classification of plants at this level varies from source to source. Thus some sources place horsetails in division Arthrophyta and ferns in division Pteridophyta,[14] while others place them both in Pteridophyta, as shown below. The division Pinophyta may be used for all gymnosperms (i.e. including cycads, ginkgos and gnetophytes),[15] or for conifers alone as below.

Since the first publication of the APG system in 1998, which proposed a classification of angiosperms to the level of orders, many sources have preferred to treat ranks higher than orders as informal clades. Where formal ranks have been provided, the traditional divisions listed below have been reduced to a very much lower level, e.g. subclasses.[16]

Division Meaning Common name Distinguishing characteristics
Anthocerotophyta[17] Anthoceros-like plants Hornworts Horn-shaped sporophytes, no vascular system
Bryophyta[18] Bryum-like plants, moss plants Mosses Persistent unbranched sporophytes, no vascular system
Marchantiophyta,[19]

Hepatophyta[18]

Marchantia-like plants

liver plants

Liverworts Ephemeral unbranched sporophytes, no vascular system
Lycopodiophyta,[20]

Lycophyta[21]

Lycopodium-like plants

"wolf" plants

Clubmosses & spikemosses Microphyll leaves, vascular system
Pteridophyta Pteris-like plants, fern plants Ferns & horsetails Prothallus gametophytes, vascular system
Pinophyta,

Coniferophyta[22]

Pinus-like plants

Cone-bearing plants

Conifers Cones containing seeds and wood composed of tracheids
Cycadophyta[23] Cycas-like plants, palm-like plants Cycads Seeds, crown of compound leaves
Ginkgophyta[24] Ginkgo-like plants Ginkgo, Maidenhair Seeds not protected by fruit (single living species)
Gnetophyta[25] Gnetum-like plants Gnetophytes Seeds and woody vascular system with vessels
Magnoliophyta,[26]

Anthophyta

Magnolia-like plants

flower plants

Flowering plants, angiosperms Flowers and fruit, vascular system with vessels

Fungal divisions

Phylum Meaning Common name Distinguishing characteristics
Chytridiomycota Little pot mushroom Chytrids Cellulose in cell walls, flagellated gametes
Deuteromycota Second mushroom Imperfect fungi Unclassified fungi; only asexual reproduction observed no other major distinguishments
Zygomycota Yolk mushroom Zygomycetes Blend gametangia to form a zygosporangium
Glomeromycota Ball mushroom None Form arbuscular mycorrhizae with plants
Ascomycota Bag/Wineskin Mushroom Sac fungi Produce spores in an 'ascus'which is a kind of fruiting bud
Basidiomycota Basidium Mushroom Club Fungi Produce spores from a 'basidium' which is a kind of fruiting bud

Protista phyla

Bacterial Phyla/Divisions

Main article: Bacterial phyla

Currently there are 29 phyla accepted by LPSN[27]

  1. Acidobacteria, phenotipically diverse and mostly uncultured
  2. Actinobacteria, High-G+C Gram positive species
  3. Aquificae, only 14 thermophilic genera, deep branching
  4. Bacteroidetes
  5. Caldiserica, formerly candidate division OP5, Caldisericum exile is the sole representative
  6. Chlamydiae, only 6 genera
  7. Chlorobi, only 7 genera
  8. Chloroflexi,
  9. Chrysiogenetes, only 3 genera (Chrysiogenes arsenatis, Desulfurispira natronophila, Desulfurispirillum alkaliphilum)
  10. Cyanobacteria, also known as the blue-green algae
  11. Deferribacteres
  12. Deinococcus-Thermus, Deinococcus radiodurans and Thermus aquaticus are "commonly known" species of this phyla
  13. Dictyoglomi
  14. Elusimicrobia, formerly candidate division Thermite Group 1
  15. Fibrobacteres
  16. Firmicutes, Low-G+C Gram positive species, such as the spore-formers Bacilli (aerobic) and Clostridia (anaerobic)
  17. Fusobacteria
  18. Gemmatimonadetes
  19. Lentisphaerae, formerly clade VadinBE97
  20. Nitrospira
  21. Planctomycetes
  22. Proteobacteria, the most known phyla, containing species such as Escherichia coli or Pseudomonas aeruginosa
  23. Spirochaetes, species include Borrelia burgdorferi, which causes Lyme disease
  24. Synergistetes
  25. Tenericutes, alternatively class Mollicutes in phylum Firmicutes (notable genus: Mycoplasma)
  26. Thermodesulfobacteria
  27. Thermomicrobia
  28. Thermotogae, deep branching
  29. Verrucomicrobia

Archaeal Phyla/Division/Kingdoms

  1. Crenarchaeota, Second most common archaeal phylum
  2. Euryarchaeota, most common archaeal phylum
  3. Korarchaeota
  4. Nanoarchaeota, ultra-small symbiotes
  5. Thaumarchaeota

See also

Biology portal

Notes

References

External links

  • Are phyla "real"? Is there really a well-defined "number of animal phyla" extant and in the fossil record?
  • Major Phyla Of Animals

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